ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: miR157d
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCTCTATGCTTCTGTCATC miRNA* TGACAGAAGATAGAGAGCAC mismatches: 1 bulges: 1 |
pre-miRNA
TGAAATTGATAGGAAGAAAGAGTGATTATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTC
AATTCATTTGTGCTCTCTATGCTTCTGTCATCACCTTCACCTCTTTCGTAAAAATATTTAA
dot-bracket secondary structure
...............((((((((((....((.((((((((((((((((((((.((((((((.(((((.......((((...)))).......))))).))
)..))))).))))))))))).))))))))).))...))).)))))))..............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGAAATTGATAGGAAGAAAGAGTGATTATTGTTGACAGAAGATAGAGAGCACTAATGATGATATGCTAATTTCATTCAATTTGGGCAGCAAAAGCATCTC
AATTCATTTGTGCTCTCTATGCTTCTGTCATCACCTTCACCTCTTTCGTAAAAATATTTAA
dot-bracket secondary structure
...............((((((((((....((.((((((((((((((((((((.((((((((.(((((.......((((...)))).......))))).))
)..))))).))))))))))).))))))))).))...))).)))))))..............
SIMILARITIES| miRBase sly-MIR156a: 9e-52 PMRD sly-miR156a: 9e-52 microPC miR157: 4e-51 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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