ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIRf564
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAACATCATCAAGATTCACAA miRNA* GGGAATCTTGATGATGCTGCA mismatches: 2 bulges: 0 |
pre-miRNA
ATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAATAT
AGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTC
dot-bracket secondary structure
...((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........)))))))))))))..
)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAATAT
AGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTC
dot-bracket secondary structure
...((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........)))))))))))))..
)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).))))).
SIMILARITIES| miRBase tcc-MIR172c: 0.00000003 PMRD ath-miRf10634-akr: 0.0000005 microPC miR172: 0.00003 | UniProt no hits RFAM mir-172: 0.000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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