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ABOUT THIS RECORD

ID: MNEST002637
species: Solanum lycopersicum
miRNA family: MIR235
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTAATATGTTGTGTTTGTTGT

miRNA*
GTTATAAGAATAAAATGAATG

mismatches: 4
bulges: 2

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pre-miRNA
TCAAAATATGGAACCATTTGAGGAGAAGTTATAAGAATAAAATGAATGGAGTGTGATCCTGCTTATGGATCCATTAGTTAATATGTTGTGTTTGTTGTCT
TTTTGTTTCTTTTTTCGTTTTG


dot-bracket secondary structure
..((((...((((.....((((((((....(((((.((((.((((((..((((.(((((.......))))))))).)))..))).)))).)))))..)))
))))).)))).)))).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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