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ABOUT THIS RECORD

ID: MNEST002640
species: Solanum lycopersicum
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTA

miRNA*
GAGCTCCTTGAAGTCCAACAA

mismatches: 3
bulges: 0

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pre-miRNA
TGTTATGGGAGTGGAGCTCCTTGAAGTCCAACAAAAAATCTAACAGGTTAAATTGAGCTGCTGACCTATGGATTCCTCAGCCCTATCTATTTATGATTTC
AAACATATAGATAGGTTTGTGGGTTTGCATATGTCAGGAGCTTTATTTTACCCTTTGTTTGATCATTTTTTGGATTGAAGGGAGCTCTACATTCATTTC


dot-bracket secondary structure
....(((((.((((((((((((..(((((((.(((..(((.(((((((.((((.(((((.(((((.((((((.(((.(((.(((((((((...((....)
).....))))))))).))).))).)).)))).))))).))))).)))).)))...)))).)))..))).)))))))..)))))))))))).)))))...



SIMILARITIES
miRBase sly-MIR159: 2e-93

PMRD sly-miR159: 2e-93

microPC miR159: 3e-98
UniProt no hits

RFAM MIR159: 1e-101
most similar mature miRNAs

Identical with: miR159 from microPC (MNEST046340)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence





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