ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: miR172a
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTGGCATAATCAAGATTCACG miRNA* AGAATCTTGATGATGCTGCAT mismatches: 2 bulges: 0 |
pre-miRNA
TATTTTTCTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTAT
TTGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTGCAATTAG
dot-bracket secondary structure
............(((((((..((((..(((((((((.((((((((((.(((((...(((.((((((((((((.(((((.....))))))))))))...))
))).)))))))).)))))))))).)))))))))..))))..)))))))...........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TATTTTTCTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTAT
TTGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTGCAATTAG
dot-bracket secondary structure
............(((((((..((((..(((((((((.((((((((((.(((((...(((.((((((((((((.(((((.....))))))))))))...))
))).)))))))).)))))))))).)))))))))..))))..)))))))...........
SIMILARITIES| miRBase sly-MIR172a: 2e-55 PMRD sly-miR172a: 2e-55 microPC miR172: 2e-55 | UniProt no hits RFAM mir-172: 0.0000000006 | most similar mature miRNAs |
Identical with: sly-MIR172a from miRBase (MNEST041542) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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