ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAC miRNA* CCTGCCTTGCATCAACTGAAT mismatches: 2 bulges: 0 |
pre-miRNA
CAACTTTTTTGCGGCCGCCTCTTATTCGCTTGGTGCAGGTCGGGACCTCATTCGCCGGCGCCGGGAATAATGCCGGACGAACGACGGCGGTGTTAATTCT
ACTAAAGCTGTCACCGACGGATAGATGTTTGATTAGCGGCGAAATTTGGGTCCTGCCTTGCATCAACTGAATTGGAGACCGCTGTGAAATGAAG
dot-bracket secondary structure
......(((((((((...((((.(((((.((((((((((.((((((((..(((((((.((((((........)))).))...((((((..((.((....)
).))..))))))...(((((((....))))).))..)))))))....)))))))).)))))))))).))))).))))...))))))))).....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
CAACTTTTTTGCGGCCGCCTCTTATTCGCTTGGTGCAGGTCGGGACCTCATTCGCCGGCGCCGGGAATAATGCCGGACGAACGACGGCGGTGTTAATTCT
ACTAAAGCTGTCACCGACGGATAGATGTTTGATTAGCGGCGAAATTTGGGTCCTGCCTTGCATCAACTGAATTGGAGACCGCTGTGAAATGAAG
dot-bracket secondary structure
......(((((((((...((((.(((((.((((((((((.((((((((..(((((((.((((((........)))).))...((((((..((.((....)
).))..))))))...(((((((....))))).))..)))))))....)))))))).)))))))))).))))).))))...))))))))).....
SIMILARITIES| miRBase tcc-MIR168: 0.0000002 PMRD sly-miR168: 4e-76 microPC miR168: 2e-78 | UniProt no hits RFAM MIR168: 0.0000002 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST045240) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
