ABOUT THIS RECORDspecies: Solanum melongena
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGCCAAAGGAGAGCTGCCCTA miRNA* GGGCTACTCTCTATTGGCATG mismatches: 4 bulges: 0 |
pre-miRNA
TGGTGTAAGGGAAATAGTGATAGGGCTACTCTCTATTGGCATGTGGTTATATGTTTGAGCTGACACGCCAAAGGAGAGCTGCCCTATTACTGTCTCCGCT
TAATC
dot-bracket secondary structure
.....(((((((.(((((((((((((..((((((.(((((.(((((((.........)))).))).))))).))))))..))))))))))))).))).))
))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGTGTAAGGGAAATAGTGATAGGGCTACTCTCTATTGGCATGTGGTTATATGTTTGAGCTGACACGCCAAAGGAGAGCTGCCCTATTACTGTCTCCGCT
TAATC
dot-bracket secondary structure
.....(((((((.(((((((((((((..((((((.(((((.(((((((.........)))).))).))))).))))))..))))))))))))).))).))
))...
SIMILARITIES| miRBase sly-MIR399: 0.00008 PMRD sly-miR399: 0.00008 microPC miR399: 9e-17 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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