ABOUT THIS RECORDspecies: Solanum melongena
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACTTCTCATTCTGTCAGC mismatches: 0 bulges: 2 |
pre-miRNA
AGAATCAAGACTGACAGAAGAGAGTGAGCACACGCAGTCAAATTGTATAACGATTTATACAATTGTCATTTGCGTGTGCTCACTTCTCATTCTGTCAGCT
CTCTCAA
dot-bracket secondary structure
.......((((((((((((((((((((((((((((((...((((((((((....)))))))))).....)))))))))))))).)))).))))))))).)
)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGAATCAAGACTGACAGAAGAGAGTGAGCACACGCAGTCAAATTGTATAACGATTTATACAATTGTCATTTGCGTGTGCTCACTTCTCATTCTGTCAGCT
CTCTCAA
dot-bracket secondary structure
.......((((((((((((((((((((((((((((((...((((((((((....)))))))))).....)))))))))))))).)))).))))))))).)
)).....
SIMILARITIES| miRBase vvi-MIR156d: 0.00000000009 PMRD stu-miR156a: 2e-36 microPC miR156: 2e-36 | UniProt no hits RFAM mir-156: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
