ABOUT THIS RECORDspecies: Solanum melongena
miRNA family: MIR157
source: miRNEST
Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCCGTCATCA mismatches: 2 bulges: 1 |
pre-miRNA
AAGAGGGAAGAGGGAAAATTGGAGTTGACAGAAGATAGAGAGCACATATGATGAGATGCTAGATGGAGGAAATTGGAGTTAAATTAAAGCATTTCACTTC
ATTTGTGCTCTCTATGCTTCCGTCATCACCTTTACCCAAATTCTCATCC
dot-bracket secondary structure
....(((((..(((.(((..((...((((.((((((((((((((((.(((((((((((((...........................)))))))))..))
)).)))))))))))).)))).))))...))))).)))...)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAGAGGGAAGAGGGAAAATTGGAGTTGACAGAAGATAGAGAGCACATATGATGAGATGCTAGATGGAGGAAATTGGAGTTAAATTAAAGCATTTCACTTC
ATTTGTGCTCTCTATGCTTCCGTCATCACCTTTACCCAAATTCTCATCC
dot-bracket secondary structure
....(((((..(((.(((..((...((((.((((((((((((((((.(((((((((((((...........................)))))))))..))
)).)))))))))))).)))).))))...))))).)))...)))))....
SIMILARITIES| miRBase tcc-MIR156e: 0.00000000003 PMRD stu-miR157a: 0.000000000008 microPC miR157: 0.00000000003 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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