ABOUT THIS RECORDspecies: Solanum melongena
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGGCAACTTGAGATCACATG mismatches: 2 bulges: 0 |
pre-miRNA
GAATCTTCTAATATTGGTGGAAGTATTCAATAGGGGCAACTTGAGATCACATGTTATTTTTTTTTTTTTCTGATGATTCTATATTTCTAACATGTGTTCT
CAGGTCGCCCCTGTCGAATTATTTTTTCACCTAATAATGAAT
dot-bracket secondary structure
.....(((...((((((((((((.((((.((((((((.((((((((.(((((((((...............................))))))))).)))
))))).)))))))).))))....)))))))).))))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAATCTTCTAATATTGGTGGAAGTATTCAATAGGGGCAACTTGAGATCACATGTTATTTTTTTTTTTTTCTGATGATTCTATATTTCTAACATGTGTTCT
CAGGTCGCCCCTGTCGAATTATTTTTTCACCTAATAATGAAT
dot-bracket secondary structure
.....(((...((((((((((((.((((.((((((((.((((((((.(((((((((...............................))))))))).)))
))))).)))))))).))))....)))))))).))))..))).
SIMILARITIES| miRBase ptc-MIR398c: 0.0000004 PMRD ptc-miR398c: 0.0000004 microPC miR398: 0.0000004 | UniProt no hits RFAM MIR398: 0.000008 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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