ABOUT THIS RECORDspecies: Solanum torvum
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Solanum torvum Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCATCATCATCATCTTCA miRNA* ATTATGATGATTTGAAATCG mismatches: 5 bulges: 1 |
pre-miRNA
TATGATTGTTGTTATGGTGATGATTATGATGATTTGAAATCGACGACCCTCCCATCGTTGCCGGCGCCGGATTTGGCGGCGGCAACAACCTTGTACTAGC
TGAAACAACAACGTTTGTTGTTGTGGTGGTTGTCGTCGTTGTCTCTTCATCATCATCATCTTCATCATCGTTTACACTTTCTT
dot-bracket secondary structure
...((..((.((.((((((((((..((((((((.((((..(((((((.....((..(((((((.(((((....))))).))))))).....))...((((
((..((((((((....))))))))..))))))..)))))))....))))..))))))))..))))))))))..))))..))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TATGATTGTTGTTATGGTGATGATTATGATGATTTGAAATCGACGACCCTCCCATCGTTGCCGGCGCCGGATTTGGCGGCGGCAACAACCTTGTACTAGC
TGAAACAACAACGTTTGTTGTTGTGGTGGTTGTCGTCGTTGTCTCTTCATCATCATCATCTTCATCATCGTTTACACTTTCTT
dot-bracket secondary structure
...((..((.((.((((((((((..((((((((.((((..(((((((.....((..(((((((.(((((....))))).))))))).....))...((((
((..((((((((....))))))))..))))))..)))))))....))))..))))))))..))))))))))..))))..))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
