miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST002682
species: Sorghum propinquum
miRNA family: MIRf341
source: miRNEST

Taxonomy by NCBI:
Sorghum propinquum Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAATACTCCCTCCGTCCCCGA

miRNA*
GGGGACGGAGGGAGTAGGGTT

mismatches: 2
bulges: 0

View larger
pre-miRNA
CTGGACTTCAGCAATACTCCCTCCGTCCCCGAAAAAATCAATTCCTAGAATCCGTGCCAGTCAAACTTTTTAAAGTTTGACTAACTTTATAGAAAAGAGT
AACAACATCTATAATATAAAATGCACATTATATGAAAATATATTCTATGATGAATCTAATAATACTAATTTGATACTATAAATTTTAGCATTTTTTCTAG
AAATTTGGTCAAAGTTTAAAAAGTTTGACTTAGGACAACTCTAGAAATTGACTCTTTCGGGGACGGAGGGAGTAGGGTTGAAAGCAG


dot-bracket secondary structure
......((((((..((((((((((((((((((((...((((((.(((((.(((.....((((((((((((((((.(((((((((.(((.(((((((((..
...((.((.((((.(((.((((...(((((((.(((......))))))))))...............)))).))).)))).)).))....))))))))).
))).))))))))).))))))))))))))))..)))....))))).))))))...))))))))))))))))))))..)))))).....



SIMILARITIES
miRBase osa-MIR437: 0.00000006

PMRD osa-miR437: 0.00000006

microPC miR1436: 0.0002
UniProt no hits

RFAM MIR1122: 0.0003
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;