ABOUT THIS RECORDspecies: Taraxacum kok-saghyz
miRNA family: MIR166
source: miRNEST
Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* ATTGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
CTCTTTTGAGGGGATTGTTGTCTGGCTCGAGGTCACAAGAAAGCTCCAATCTTTCACTCTCTTTATACTTATGCATGATAAGATCATGGGTTTTCTGGTG
TCGTCGGACCAGGCTTCATTCCCCTCAATTGT
dot-bracket secondary structure
.....(((((((((.((..((((((.((((...(((.(((((((.(((((((((((...................))).)))))..)))))))))).)))
...)))).))))))..)).)))))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCTTTTGAGGGGATTGTTGTCTGGCTCGAGGTCACAAGAAAGCTCCAATCTTTCACTCTCTTTATACTTATGCATGATAAGATCATGGGTTTTCTGGTG
TCGTCGGACCAGGCTTCATTCCCCTCAATTGT
dot-bracket secondary structure
.....(((((((((.((..((((((.((((...(((.(((((((.(((((((((((...................))).)))))..)))))))))).)))
...)))).))))))..)).)))))))))....
SIMILARITIES| miRBase aqc-MIR166e: 0.000000000007 PMRD aqc-miR166e: 0.000000000007 microPC miR166: 0.0000000001 | UniProt no hits RFAM mir-166: 0.000000008 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
