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ABOUT THIS RECORD
ID:
MNEST002695
species:
Taraxacum kok-saghyz
miRNA family:
miR171b-5p
source:
miRNEST
Taxonomy by NCBI:
Taraxacum kok-saghyz
Taraxacum
Crepidinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ACGGCGTGGTATTGGTACGGT
miRNA*
CGAACCAATATCACTCTTGT
mismatches:
2
bulges:
1
View larger
pre-miRNA
AGAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGAC
ACGGCGTGGTATTGGTACGGT
TCATCAACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTG
ACATGAGC
CGAACCAATATCACTCTTGT
ATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCGA
dot-bracket secondary structure
..............((((((.(((..((((((((((.((
(.((.(((((((((((.((((
(((((((..(((((((............)))))))..)))
)..)))))
)).))))))))))))).)))
.))))))))))......))).)))))).........
SIMILARITIES
miRBase
vvi-MIR479
:
0.00000003
PMRD
vvi-miR479
:
0.00000003
microPC
miR171
:
0.0001
UniProt
no hits
RFAM
MIR171_2: 0.00000001
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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