ABOUT THIS RECORDspecies: Taraxacum kok-saghyz
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGTGCGCCATGAAAACACATG mismatches: 2 bulges: 2 |
pre-miRNA
ATAATGGCAGAGGTATCCGGCAGGTGCGCCATGAAAACACATGTGAAATGTACAATATACTAGGTCATGTCATGTGTTCTCAGGTCGCCCCTGCAAGATT
TTCCTTTGTCCA
dot-bracket secondary structure
....(((((((((.(((..(((((.(((((.(((.(((((((((((...(((.....)))....)))...)))))))).))))).))).)))))..))).
..)))))).)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ATAATGGCAGAGGTATCCGGCAGGTGCGCCATGAAAACACATGTGAAATGTACAATATACTAGGTCATGTCATGTGTTCTCAGGTCGCCCCTGCAAGATT
TTCCTTTGTCCA
dot-bracket secondary structure
....(((((((((.(((..(((((.(((((.(((.(((((((((((...(((.....)))....)))...)))))))).))))).))).)))))..))).
..)))))).)))
SIMILARITIES| miRBase vvi-MIR398c: 0.0000003 PMRD vvi-miR398c: 0.0000003 microPC miR398: 3e-23 | UniProt no hits RFAM MIR398: 0.000006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
