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ABOUT THIS RECORD

ID: MNEST002713
species: Thellungiella halophila
miRNA family: MIRf129
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCCGGAGGGATTCCTTCTTTG

miRNA*
AAGCGTGGATTCTTTCTGGATG

mismatches: 3
bulges: 1

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pre-miRNA
CTCTGAGCCTCAACACAAGATGAAGCGTGGATTCTTTCTGGATGTTGTAGTCAGCCAAAGTACGGCCATCTTCGAGCTGTTTTCCGGCGAAGATCAATCG
CTGCTGGTCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCCTTGA


dot-bracket secondary structure
......(((......((((((((((...(((.(((((((((((...(((((..(((.......))).((((((..((((.....)))))))))).....)
))))..))))))))))).)))..))))))))))......))).....



SIMILARITIES
miRBase no hits

PMRD ath-miRf10060-akr: 0.00003

microPC no hits
UniProt sp|P0CH32|UBQ4_ARATH: 2e-20

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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