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ABOUT THIS RECORD

ID: MNEST002715
species: Theobroma cacao
miRNA family: MIRf345
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CACCAAAGGCCTCCGCCCTTC

miRNA*
AGGGCAAAGCTTTTGGTTTT

mismatches: 4
bulges: 1

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pre-miRNA
TTATGAGGCCCCAATTCTTGACGGGAGGGGACACCAAAGGCCTCCGCCCTTCCATCCCATGGATAAATAGAGAGGGAGGGCAAAGCTTTTGGTTTTTTCA
TGTTGTCAAAAAGTTGAACAAGGG


dot-bracket secondary structure
........((((..((((....))))))))..(((((((((....((((((((((((...)))).........))))))))...)))))))))....((.
(((..((((....))))))).)).



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12309-akr: 3e-20

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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