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ABOUT THIS RECORD
ID:
MNEST002715
species:
Theobroma cacao
miRNA family:
MIRf345
source:
miRNEST
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CACCAAAGGCCTCCGCCCTTC
miRNA*
AGGGCAAAGCTTTTGGTTTT
mismatches:
4
bulges:
1
View larger
pre-miRNA
TTATGAGGCCCCAATTCTTGACGGGAGGGGA
CACCAAAGGCCTCCGCCCTTC
CATCCCATGGATAAATAGAGAGGG
AGGGCAAAGCTTTTGGTTTT
TTCA
TGTTGTCAAAAAGTTGAACAAGGG
dot-bracket secondary structure
........((((..((((....)))))))).
.(((((((((....(((((((
(((((...)))).........)))
)))))...)))))))))...
.((.
(((..((((....))))))).)).
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf12309-akr
:
3e-20
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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