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ABOUT THIS RECORD
ID:
MNEST002736
species:
Theobroma cacao
miRNA family:
MIRf536
source:
miRNEST
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CATTGGACTGAAGGGAGCTCC
miRNA*
AGCTCCTTTCAGTCCAATACA
mismatches:
1
bulges:
0
View larger
pre-miRNA
GGGGGGCTAAGG
AGCTCCTTTCAGTCCAATACA
GGGGGCAGAGATGTGGATAGAGCTGCCATCTCATGCATTGGGTTATGCTTAGTGTTTTATTGGAAAG
ATTTGCCAATATTCATCACCCAAAAAAGAGGGAGAAGATTATGAATGTTGAGTTTAGCCCGATGCATGGTGTGGGAGCAACTCCTTCCACATACTTTGCC
CACC
CATTGGACTGAAGGGAGCTCC
TGGTTTCAT
dot-bracket secondary structure
..(((((((.((
((((((((((((((((((...
(((((((((((((((((..(((((.((((.(((((((((((((((.(((((((((((((((((....
.....)))))).((.((.(((........))).)).))....))))))))))).))))))))))))))).)))).)))...))..))))))).)))))))
).))
.))))))))))))))))))))
)))))))..
SIMILARITIES
miRBase
ptc-MIR319e
:
2e-23
PMRD
ptc-miRf10576-akr
:
2e-23
microPC
miR319
:
0.0007
UniProt
no hits
RFAM
MIR159: 3e-25
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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