miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST002737
species:
Theobroma cacao
miRNA family:
MIRf160
source:
miRNEST
Taxonomy by NCBI:
Theobroma cacao
Theobroma
Byttnerioideae
Malvaceae
Malvales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCAGCAGCAGCAGCTGCAC
miRNA*
GCAAGTTGCTTTGCTGTTTCA
mismatches:
4
bulges:
2
View larger
pre-miRNA
GGCTATCTCAA
TTGCAGCAGCAGCAGCTGCAC
CAGATGATATACCTACCAACAATCCTTCTTTCAGA
GCAAGTTGCTTTGCTGTTTCA
ATAGCTTC
dot-bracket secondary structure
((((((.....
..(((((((.(((((((((..
.(((.(((.............)))..)))......
)).))))))))))))))....
))))))..
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
sp|Q43725|CYSKM_ARATH: 0.0007
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record