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ABOUT THIS RECORD

ID: MNEST002738
species: Theobroma cacao
miRNA family: MIRf445
source: miRNEST

Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CCGATGCAGCATCATCAAGAT

miRNA*
CTTGATGATGCTACACCCGCA

mismatches: 4
bulges: 0

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pre-miRNA
AAAGGGTCTTTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTTCCAAACAACTTTGGCATAAAGGAGAAGGGAAAAGAAAGGGGA
AGGGGAGAAAAAAAGAAGAGAGTTTGTATTATCCATCACCACCACCGTGCATTTGCATGTGAATCTTGATGATGCTACACCCGCAAACAACGACTGTCAA
TCTATCTATC


dot-bracket secondary structure
...((((...(((.(((((((((..((((...((.((((((((((((((((((..(((((......(((((...)))))......))))).))..((.((
.(((......(((.........)))......))).))....))..(((((....))))).)))))))))))))))).))...))))..))))))))))))
...))))...



SIMILARITIES
miRBase tcc-MIR172e: 2e-38

PMRD gma-miR172b: 5e-20

microPC miR172: 0.000003
UniProt no hits

RFAM mir-172: 9e-19
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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