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ABOUT THIS RECORD

ID: MNEST002771
species: Triphysaria pusilla
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TGTTGGAACGGCTCAATCAAA

mismatches: 1
bulges: 0

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pre-miRNA
TTTTGTAGTAGCTAGTTATGATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATCATGTTC
CGCTTTGCTTTT


dot-bracket secondary structure
....((((.(((....(((((((((((.(((((((((((((((.(((...(((((...)))))...))).))))))))))))))).)))))))))))...
.)))))))....



SIMILARITIES
miRBase vvi-MIR171i: 7e-21

PMRD vvi-miR171i: 7e-21

microPC miR171: 1e-40
UniProt no hits

RFAM MIR171_1: 1e-19
most similar mature miRNAs

Identical with: miR171 from microPC (MNEST046160)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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