ABOUT THIS RECORDspecies: Triticum turgidum subsp. durum
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Triticum turgidum subsp. durum Triticum turgidum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTACTTCCTCCGTTCCTAAA miRNA* TTGGAACGGAGGGAGTACATA mismatches: 5 bulges: 0 |
pre-miRNA
GTTTGGAACGGAGGGAGTACATATTTGCTATGATCTGTCAATCATTGAGATGCAATAGCATGCATGTTAGTCTCCTTTGTATTTGATGAAATGTTGCAAC
GGGCAACCTTGGACGCAAGATACATGTAACAGAAGCTGGAAGCTTCATAGCCTTGTAAAAATATATCTCGCTGATAAATTACAGTACGTACTATACTAGT
ACTTCCTCCGTTCCTAAAAAAAAAAAA
dot-bracket secondary structure
....((((((((((((((((.....((.((((..((((..((((.(((((((.....(((.(((((..(((.(((...((.((((.((..(((((((...
..)))..((((....))))..)))).)).)))).)).))).))).))).))..))).......))))))).)))).....))))..)))).)).....))
)))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GTTTGGAACGGAGGGAGTACATATTTGCTATGATCTGTCAATCATTGAGATGCAATAGCATGCATGTTAGTCTCCTTTGTATTTGATGAAATGTTGCAAC
GGGCAACCTTGGACGCAAGATACATGTAACAGAAGCTGGAAGCTTCATAGCCTTGTAAAAATATATCTCGCTGATAAATTACAGTACGTACTATACTAGT
ACTTCCTCCGTTCCTAAAAAAAAAAAA
dot-bracket secondary structure
....((((((((((((((((.....((.((((..((((..((((.(((((((.....(((.(((((..(((.(((...((.((((.((..(((((((...
..)))..((((....))))..)))).)).)))).)).))).))).))).))..))).......))))))).)))).....))))..)))).)).....))
)))))))))))))).............
SIMILARITIES| miRBase tae-MIR1137: 0.0007 PMRD tae-miR1137: 0.0007 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
