ABOUT THIS RECORDspecies: Vitis shuttleworthii
miRNA family: miR168a
source: miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCCGCCTTGCATCAACTGAAT miRNA* TCGCTTGGTGCAGGTCGGGAA mismatches: 2 bulges: 0 |
pre-miRNA
TGGTTCTTACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATGGGTTGCT
GAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGGTGATGTGA
dot-bracket secondary structure
......((((.((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...(((((((((.....))))))))
).))))).))...))))).)))))))))).))))).)))))).)).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGGTTCTTACGGTGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACCGACTTCGCCGCTCCGGCAGCGCCGGAGGCACGCGGCGGCCTACGATGGGTTGCT
GAGCGAATTCCGATCCCGCCTTGCATCAACTGAATCGGAGACGGCGGTGATGTGA
dot-bracket secondary structure
......((((.((.((((((.(((((.((((((((((.(((((...((.(((((.((((((((...)))))).))...(((((((((.....))))))))
).))))).))...))))).)))))))))).))))).)))))).)).)))).....
SIMILARITIES| miRBase vvi-MIR168: 2e-68 PMRD vvi-miR168: 2e-68 microPC miR168: 2e-55 | UniProt no hits RFAM MIR168: 3e-76 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
