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ABOUT THIS RECORD

ID: MNEST002825
species: Vitis shuttleworthii
miRNA family: MIR394
source: miRNEST

Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGTGGGCATACTGCCAACCA

miRNA*
TTGGCATTCTGTCCACCTCC

mismatches: 5
bulges: 0

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pre-miRNA
TTCTTTCATATGGGTTTGACAAAGGGTTTCTCACAGAGTTTATTGGCATTCTGTCCACCTCCCATCTCTTGAAAATCTCTCTTTTCTCTCTGTGGAGGTG
GGCATACTGCCAACCA
AGCTCTGTTGGACTCTCTTTGTAAAACCCTCGTGATACC


dot-bracket secondary structure
.....((((..((((((.((((((((..(((.(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))
))))...))))))..)
)))))))).)))..)))))))).))))))..))))....



SIMILARITIES
miRBase vvi-MIR394b: 1e-47

PMRD vvi-miR394b: 1e-47

microPC miR394: 2e-34
UniProt no hits

RFAM MIR394: 2e-49
most similar mature miRNAs

Identical with: vvi-miR394b from PMRD (MNEST054852)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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