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ABOUT THIS RECORD

ID: MNEST002839
species: Zingiber officinale
miRNA family: MIRf345
source: miRNEST

Taxonomy by NCBI:
Zingiber officinale Zingiber Zingiberaceae Zingiberales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CACCAAAGGCCTCTGCCCTTC

miRNA*
TGGGCAGAGCTTTTGGTTTT

mismatches: 4
bulges: 1

View larger
pre-miRNA
TGGCTAGTGATTGTGAGGCCCCAATTCTTGACTGGAAGGGACACCAAAGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGTGGGCAGAGCTTTT
GGTTTT
TCATGTTGTCAAACAGTTGAACAATGAAAATAGATAGC


dot-bracket secondary structure
.((((...........))))((..((((.....)))).))..(((((((((.(((((((......(((((...........))))).)))))))))))))
)))(((
((((....((((....))))...)))))))........



SIMILARITIES
miRBase no hits

PMRD ptc-miRf12309-akr: 6e-25

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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