miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST002839
species:
Zingiber officinale
miRNA family:
MIRf345
source:
miRNEST
Taxonomy by NCBI:
Zingiber officinale
Zingiber
Zingiberaceae
Zingiberales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CACCAAAGGCCTCTGCCCTTC
miRNA*
TGGGCAGAGCTTTTGGTTTT
mismatches:
4
bulges:
1
View larger
pre-miRNA
TGGCTAGTGATTGTGAGGCCCCAATTCTTGACTGGAAGGGA
CACCAAAGGCCTCTGCCCTTC
CATCCCTTGGATAGATAGAGAGGG
TGGGCAGAGCTTTT
GGTTTT
TCATGTTGTCAAACAGTTGAACAATGAAAATAGATAGC
dot-bracket secondary structure
.((((...........))))((..((((.....)))).)).
.(((((((((.(((((((...
...(((((...........)))))
.)))))))))))))
)))(((
((((....((((....))))...)))))))........
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf12309-akr
:
6e-25
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record