ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: miR396b
source: miRNEST
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCTCAAGAAAGCTGTGGGAAA miRNA* TTCCACAGCTTTCTTGAACTT mismatches: 3 bulges: 0 |
pre-miRNA
GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAAC
ATGGCAATTCAGGATTT
dot-bracket secondary structure
((((((...(((((((((((((((((.(((((.((...((((...((((.......)))).)))).....)).))))).)))))))))))))))))...)
)))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GTCATGCTATTCCACAGCTTTCTTGAACTTTCTTGAACTGCTTTTTATAATTTTTGTATATAGCACCATACATGGAAGCTCAAGAAAGCTGTGGGAAAAC
ATGGCAATTCAGGATTT
dot-bracket secondary structure
((((((...(((((((((((((((((.(((((.((...((((...((((.......)))).)))).....)).))))).)))))))))))))))))...)
)))))............
SIMILARITIES| miRBase tcc-MIR396c: 1e-16 PMRD gma-miR396b: 0.0000000001 microPC miR396: 4e-44 | UniProt no hits RFAM MIR396: 0.0000000001 | most similar mature miRNAs |
Identical with: miR396 from microPC (MNEST046563) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
