ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIRf1281
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTTTGGTTGCTGAGAAAG miRNA* TTAAGCAATCAGACACAGA mismatches: 4 bulges: 2 |
pre-miRNA
TTCCTGTTTGGAGTTTTTGGATTTGTTTGGTTGCTGAGAAAGTTGAAAGAGAAGTTCATATGAATGGATGAAATCTCGCAAATATGCTCGATGGGCGGGT
ACGGTGATTACTCGAGCATCGTTCTTCTCATTTTATGATCATCAAGATTTTGGGGTTTAAGCAATCAGACACAGACAAATATTCTTTGATTCT
dot-bracket secondary structure
.....(((.(((((.((((....((((((((((((...(((.(((...((((..(((((........))))).)))).)))...(((((...)))))((.
((((((.((....)).)))))).))(((((..((.(((...))).))...)))))))).))))))))))))....)))).)))))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCCTGTTTGGAGTTTTTGGATTTGTTTGGTTGCTGAGAAAGTTGAAAGAGAAGTTCATATGAATGGATGAAATCTCGCAAATATGCTCGATGGGCGGGT
ACGGTGATTACTCGAGCATCGTTCTTCTCATTTTATGATCATCAAGATTTTGGGGTTTAAGCAATCAGACACAGACAAATATTCTTTGATTCT
dot-bracket secondary structure
.....(((.(((((.((((....((((((((((((...(((.(((...((((..(((((........))))).)))).)))...(((((...)))))((.
((((((.((....)).)))))).))(((((..((.(((...))).))...)))))))).))))))))))))....)))).)))))..)))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
