ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIR403
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTAGATTCACGCACAAACTCG miRNA* AGTTTGTGCGCGAATCTAATC mismatches: 4 bulges: 0 |
pre-miRNA
GCTCGGTGACGGAAAGGACGAGGCATATTTCAAGTTTGTGCGCGAATCTAATCCAAAAAAACTCATCACTGAAACAGGCTTCTTGCCGTTCCCCTTTGAT
TTACTAATCAAATGCACTGCTTCATGGCGGGTGTGTGCTAGATTCACGCACAAACTCGTAATCTGTCTTCGTCTGTTCTCTTCTTTC
dot-bracket secondary structure
.......((.((((.((((((((((.(((...((((((((((.(((((((...((.....((((.(((.((((.(((((...............((((((
(....))))))).)).))).))))))).))))...)).))))))).))))))))))...))).)).)))))))).)))).)).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTCGGTGACGGAAAGGACGAGGCATATTTCAAGTTTGTGCGCGAATCTAATCCAAAAAAACTCATCACTGAAACAGGCTTCTTGCCGTTCCCCTTTGAT
TTACTAATCAAATGCACTGCTTCATGGCGGGTGTGTGCTAGATTCACGCACAAACTCGTAATCTGTCTTCGTCTGTTCTCTTCTTTC
dot-bracket secondary structure
.......((.((((.((((((((((.(((...((((((((((.(((((((...((.....((((.(((.((((.(((((...............((((((
(....))))))).)).))).))))))).))))...)).))))))).))))))))))...))).)).)))))))).)))).)).....
SIMILARITIES| miRBase tcc-MIR403a: 0.0000000002 PMRD cpa-miR403: 8e-25 microPC miR403: 0.000009 | UniProt no hits RFAM MIR403: 2e-65 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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