ABOUT THIS RECORDspecies: Carica papaya
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Carica papaya Carica Caricaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATGA miRNA* GTAGTGGAGATGGGATGACT mismatches: 3 bulges: 1 |
pre-miRNA
TGTCGAGGTTTAGTAGTGGAGATGGGATGACTCTTGATTTCTTGGGGATTGGCGGGTCAAGAAACAGCGGTAGGATCAATAATAGTAGTGATAATAATAA
TAATATTCTGCATGATCATCAAGAACATCAAGAATTGATAATTGAGTTTGGATCAGGAGGAATCAATGGCGGTCATCATCATCATCATCATGAGACAAGA
AT
dot-bracket secondary structure
..((...((((.((.((((.(((((((((((((((((((((((((.((((((((((..............((..((((.((....)).))))..))....
......))))).))))).))))))).)))))).((((((..((((.......)))).....))))))...))))))).))))).)))).)).))))..))
..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TGTCGAGGTTTAGTAGTGGAGATGGGATGACTCTTGATTTCTTGGGGATTGGCGGGTCAAGAAACAGCGGTAGGATCAATAATAGTAGTGATAATAATAA
TAATATTCTGCATGATCATCAAGAACATCAAGAATTGATAATTGAGTTTGGATCAGGAGGAATCAATGGCGGTCATCATCATCATCATCATGAGACAAGA
AT
dot-bracket secondary structure
..((...((((.((.((((.(((((((((((((((((((((((((.((((((((((..............((..((((.((....)).))))..))....
......))))).))))).))))))).)))))).((((((..((((.......)))).....))))))...))))))).))))).)))).)).))))..))
..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.00005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
