ABOUT THIS RECORDspecies: Catharanthus roseus
miRNA family: MIRf592
source: miRNEST
Taxonomy by NCBI:
Catharanthus roseus Catharanthus Vinceae Rauvolfioideae Apocynaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGCAAGTTGTCTTTGGCTACA miRNA* CAGCCAAGGATGACTTGCCGA mismatches: 1 bulges: 0 |
pre-miRNA
ATTTCCATGTAGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATA
TTTGCCGCCGTACGTATTTATACGAACTCCTCGGCAAGTTGTCTTTGGCTACATCCTACTTCCTTCATCTCTT
dot-bracket secondary structure
......(((.((.((((((.(((.((((((((((((((((((((..((((....))))((((....((.((((((..................)))))).
))..)))).((.((((....)))).))...)))))))))))))))))))).))).)))))).)).))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTTCCATGTAGAAAGTAGTGTGCAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATA
TTTGCCGCCGTACGTATTTATACGAACTCCTCGGCAAGTTGTCTTTGGCTACATCCTACTTCCTTCATCTCTT
dot-bracket secondary structure
......(((.((.((((((.(((.((((((((((((((((((((..((((....))))((((....((.((((((..................)))))).
))..)))).((.((((....)))).))...)))))))))))))))))))).))).)))))).)).))).....
SIMILARITIES| miRBase ath-MIR169a: 0.000000000009 PMRD ath-miR169a: 0.000000000009 microPC miR169: 2e-37 | UniProt no hits RFAM MIR169_2: 0.0000000007 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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