ABOUT THIS RECORDspecies: Centaurea maculosa
miRNA family: MIRf144
source: miRNEST
Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATGGCGTATGAGGAGCCTAG miRNA* TGGCTCCATGTATGACATTTT mismatches: 4 bulges: 0 |
pre-miRNA
AGATACATACACGATGAGTGCAAGTATATGCCTGGCTCCATGTATGACATTTTCAGAGACCATCGGTATTTCCAATGGCCTCCGTGAATGGCGTATGAGG
AGCCTAGCATATTCCACATCTTGTACGTTCTACAAC
dot-bracket secondary structure
.....(((.....))).(((((((.((((((..((((((.((((((.(((((...(((.((((.((.....)).)))).)))...))))).)))))).))
))))..)))))).......)))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGATACATACACGATGAGTGCAAGTATATGCCTGGCTCCATGTATGACATTTTCAGAGACCATCGGTATTTCCAATGGCCTCCGTGAATGGCGTATGAGG
AGCCTAGCATATTCCACATCTTGTACGTTCTACAAC
dot-bracket secondary structure
.....(((.....))).(((((((.((((((..((((((.((((((.(((((...(((.((((.((.....)).)))).)))...))))).)))))).))
))))..)))))).......)))))))..........
SIMILARITIES| miRBase ptc-MIR160c: 0.000000000002 PMRD ptc-miR160c: 0.000000000002 microPC miR160: 1e-28 | UniProt no hits RFAM mir-160: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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