ABOUT THIS RECORDspecies: Centaurea solstitialis
miRNA family: MIR408
source: miRNEST
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCACTGCCTCTTCCCTGGCT miRNA* ACAGGGACGAGACAGAGCCCG mismatches: 5 bulges: 0 |
pre-miRNA
TTTGCGTGATTTTAATGGTATAGATGGAGATGTGAGGGTAGACAGGGACGAGACAGAGCCCGAAAAAGCCTAGTCAATACTTGGGTCAGTATTGTTGTCT
TTTTCATGCACTGCCTCTTCCCTGGCTATCCTCTTCTCTCTATACTCGTGTTGTTTGATTATGTT
dot-bracket secondary structure
...((((((((.((((((((((((..((((...((((((((.((((((.(((.(((.((..(((((((..(((.(((((((......)))))))))).))
)))))..)).))).))).)))))).)))))))).))))))))))))...))))...)))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTGCGTGATTTTAATGGTATAGATGGAGATGTGAGGGTAGACAGGGACGAGACAGAGCCCGAAAAAGCCTAGTCAATACTTGGGTCAGTATTGTTGTCT
TTTTCATGCACTGCCTCTTCCCTGGCTATCCTCTTCTCTCTATACTCGTGTTGTTTGATTATGTT
dot-bracket secondary structure
...((((((((.((((((((((((..((((...((((((((.((((((.(((.(((.((..(((((((..(((.(((((((......)))))))))).))
)))))..)).))).))).)))))).)))))))).))))))))))))...))))...)))))))).
SIMILARITIES| miRBase ahy-MIR408: 0.000002 PMRD ppt-miR408b: 0.000002 microPC miR408: 0.000002 | UniProt no hits RFAM MIR408: 0.00004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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