ABOUT THIS RECORDspecies: Centaurea solstitialis
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCTTCATCATCATCTTCC miRNA* ACGATGATGATGAAGATGAAG mismatches: 2 bulges: 0 |
pre-miRNA
CTTCAAGTTCTTCATCTTCATCATCATCTTCCATTGTTACCACTTCAAGAATATCATGTTTCAATGCGTGTAAACCAAAACCGATCAGTATTACCCCTTC
CAAAGCTCGATTATTTCGCCACGAACGAACAACTCCAACCCCAACTGTGATTGCTTCAGGTGAACAACTGAAAACTGAGGAATTGAGTAAAGACGATGAT
GATGAAGATGAAGACGGTCCG
dot-bracket secondary structure
........((((((((((((((((((((.((.....((((((.(((.......(((..(((((.((.((....)))).....(((((((.((........
.)).))).))))..((((((..((((((.((................)).))).))).))))))....)))))..))).))).)).)))).)).))))))
)))))))))))))).......
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CTTCAAGTTCTTCATCTTCATCATCATCTTCCATTGTTACCACTTCAAGAATATCATGTTTCAATGCGTGTAAACCAAAACCGATCAGTATTACCCCTTC
CAAAGCTCGATTATTTCGCCACGAACGAACAACTCCAACCCCAACTGTGATTGCTTCAGGTGAACAACTGAAAACTGAGGAATTGAGTAAAGACGATGAT
GATGAAGATGAAGACGGTCCG
dot-bracket secondary structure
........((((((((((((((((((((.((.....((((((.(((.......(((..(((((.((.((....)))).....(((((((.((........
.)).))).))))..((((((..((((((.((................)).))).))).))))))....)))))..))).))).)).)))).)).))))))
)))))))))))))).......
SIMILARITIES| miRBase ath-MIR414: 0.0002 PMRD ath-miR414: 0.0002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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