ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: MIR1134
source: miRNEST
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAACAACAACAAGAAGAAGAG miRNA* CTTATTTGTTGTTGTTGGG mismatches: 1 bulges: 2 |
pre-miRNA
AAAACGAGGAGCAACAACAACAAGAAGAAGAGTCAAGTAGTCATCTGGACAGAGACCTTCAACAATTGGATTCTTATTTGTTGTTGTTGGGTTTCAATC
dot-bracket secondary structure
.....((((..(((((((((((((...(((((((.(((.(((.....))).((.....))....))).))))))).)))))))))))))..))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAACGAGGAGCAACAACAACAAGAAGAAGAGTCAAGTAGTCATCTGGACAGAGACCTTCAACAATTGGATTCTTATTTGTTGTTGTTGGGTTTCAATC
dot-bracket secondary structure
.....((((..(((((((((((((...(((((((.(((.(((.....))).((.....))....))).))))))).)))))))))))))..))))....
SIMILARITIES| miRBase tae-MIR1134: 0.00000008 PMRD tae-miR1134: 0.00000008 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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