ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: MIRf1255
source: miRNEST
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGCATGTACTTTCCTAGACA miRNA* TCTAGGAGAGTTTTATGTCATG mismatches: 2 bulges: 1 |
pre-miRNA
TAGTTTTCTAGGAGAGTTTTATGTCATGGTTAAGAAAATTACCGGTCAAAGGTCCATGGCATGTACTTTCCTAGACAATG
dot-bracket secondary structure
..(((.(((((((((((..((((((((((...........(((.......))))))))))))).))))))))))).))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAGTTTTCTAGGAGAGTTTTATGTCATGGTTAAGAAAATTACCGGTCAAAGGTCCATGGCATGTACTTTCCTAGACAATG
dot-bracket secondary structure
..(((.(((((((((((..((((((((((...........(((.......))))))))))))).))))))))))).))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
