ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: miR393b
source: miRNEST
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATCATGCGATCTCTTTGGAAG miRNA* TCCAAAGGGATCGCATTGATCC mismatches: 0 bulges: 1 |
pre-miRNA
AGCAGGTGGAAGCTTCCAAAGGGATCGCATTGATCCGGTTTATCAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCTGCAAATT
TTTTTATCCAATTTGATAATTTGGATCATGCGATCTCTTTGGAAGTTTCCGTCCGT
dot-bracket secondary structure
....((((((((((((((((((((((((((.(((((((.(((((((..(((..(((((((.........(((((.......)))))........))))))
)....)))....))))))).))))))))))))))))))))))))))))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGCAGGTGGAAGCTTCCAAAGGGATCGCATTGATCCGGTTTATCAATCGATTCGAGTTTGATTCATTCATCTATCATATCCATGGAAGCAGCTGCAAATT
TTTTTATCCAATTTGATAATTTGGATCATGCGATCTCTTTGGAAGTTTCCGTCCGT
dot-bracket secondary structure
....((((((((((((((((((((((((((.(((((((.(((((((..(((..(((((((.........(((((.......)))))........))))))
)....)))....))))))).))))))))))))))))))))))))))))))).))..
SIMILARITIES| miRBase sbi-MIR393: 0.0000001 PMRD sbi-miR393: 0.0000001 microPC miR393: 1e-56 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
