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ABOUT THIS RECORD

ID: MNEST002981
species: Cichorium endivia
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGAGAGGGAGCAT

miRNA*
GCTCTCTTTCTATCTGTCAGCT

mismatches: 0
bulges: 1

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pre-miRNA
TCAACATTAAGTTGACAGAAGAGAGGGAGCATTCATAGTTCTTGCATGAAAGAAATCATGCTTGAATTTATGTATGCTCTCTTTCTATCTGTCAGCTTTT
TTCCC


dot-bracket secondary structure
........((((((((((((((((((((((((.((((((((..((((((......))))))..))).))))).))))))))))))).)))))))))))..
.....



SIMILARITIES
miRBase vvi-MIR156a: 0.00008

PMRD vvi-miR156a: 0.00008

microPC miR156: 2e-42
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045293)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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