ABOUT THIS RECORDspecies: Cichorium endivia
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TATTGAGCGGCTCATTCTAA mismatches: 3 bulges: 1 |
pre-miRNA
AGAAATGGAGAGATATTGAGCGGCTCATTCTAAAACAAAGTTAACCATTAGTTATCTTCGTGGTTCTGATTGAGCCGTGCCAATATCTCTCCTTTGG
dot-bracket secondary structure
......((((((((((((.((((((((.((.((.((.(((.((((.....)))).))).))..))..)).))))))))..)))))))))))).....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAAATGGAGAGATATTGAGCGGCTCATTCTAAAACAAAGTTAACCATTAGTTATCTTCGTGGTTCTGATTGAGCCGTGCCAATATCTCTCCTTTGG
dot-bracket secondary structure
......((((((((((((.((((((((.((.((.((.(((.((((.....)))).))).))..))..)).))))))))..)))))))))))).....
SIMILARITIES| miRBase hvu-MIR171: 0.00000002 PMRD zma-miR171d: 0.00000007 microPC miR171: 0.00000007 | UniProt no hits RFAM MIR171_1: 0.000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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