ABOUT THIS RECORDspecies: Artemisia annua
miRNA family: MIR1030
source: miRNEST
Taxonomy by NCBI:
Artemisia annua Artemisia Artemisiinae Anthemideae Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGCACCTGCACCTGCACCA miRNA* CTGCGGGTGCGGGTTCGGGTT mismatches: 4 bulges: 0 |
pre-miRNA
ATAAACCACCACCTGCACCTGCACCTGCACCAGTTCAAGATTCAGGTTTAAGGGGCAGTGAGGAAGGTAGGGTTGGTGTTACACCGTCTTCGGTACCGGT
TTCTGGTGTGAATCCTGCGGGTGCGGGTTCGGGTTCTGCGCAG
dot-bracket secondary structure
..........(((((.(((((((((((((...(((((....(((((.....((.((...(((((.(((..............))).))))).)).))...
.)))))..)))))..))))))))))))).))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATAAACCACCACCTGCACCTGCACCTGCACCAGTTCAAGATTCAGGTTTAAGGGGCAGTGAGGAAGGTAGGGTTGGTGTTACACCGTCTTCGGTACCGGT
TTCTGGTGTGAATCCTGCGGGTGCGGGTTCGGGTTCTGCGCAG
dot-bracket secondary structure
..........(((((.(((((((((((((...(((((....(((((.....((.((...(((((.(((..............))).))))).)).))...
.)))))..)))))..))))))))))))).))))).........
SIMILARITIES| miRBase ptc-MIR530a: 0.00003 PMRD ptc-miRf11026-akr: 0.00003 microPC miR1030: 0.0004 | UniProt no hits RFAM MIR530: 0.0005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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