ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCTTCATCGTCATCGTGG miRNA* GCGAAAGGCTGTGCAGGTGAAC mismatches: 3 bulges: 1 |
pre-miRNA
TATCATCATGTCGTCAATGGTGATCTCCTTCGCGAAAGGCTGTGCAGGTGAACTCGAGTTTTCGGGCTAGATCCTCTTTGGAGACTATGACCTTCATAGA
CAGGCTACTATCTTCGTCGCCCTCATCGTCATCTTCATCGTCATCGTGGCAGCAGCATCACCGTCGGGCCTCATCAT
dot-bracket secondary structure
.......(((..(((.((((((((((.((((((((..(((.(((.((((((...(((......((((.(((...))).((((((((((((...)))))).
.((....)).))))))..))))...))))))))).))).))).)))))).)).)).))))))))..)))..)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TATCATCATGTCGTCAATGGTGATCTCCTTCGCGAAAGGCTGTGCAGGTGAACTCGAGTTTTCGGGCTAGATCCTCTTTGGAGACTATGACCTTCATAGA
CAGGCTACTATCTTCGTCGCCCTCATCGTCATCTTCATCGTCATCGTGGCAGCAGCATCACCGTCGGGCCTCATCAT
dot-bracket secondary structure
.......(((..(((.((((((((((.((((((((..(((.(((.((((((...(((......((((.(((...))).((((((((((((...)))))).
.((....)).))))))..))))...))))))))).))).))).)))))).)).)).))))))))..)))..)))...
SIMILARITIES| miRBase no hits PMRD no hits microPC miR414: 0.0001 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
