ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTACTTCCTCCGTTCCTAAA miRNA* TAGGAACGGAGGGAGTATTTA mismatches: 0 bulges: 0 |
pre-miRNA
TTCCATTGTTAGGTACTTCCTCCGTTCCTAAATACTTGTCGCTATTTTAGTGCAAACTTGTACTAAAACAGCGACAAGTATTTAGGAACGGAGGGAGTAT
TTACTTATCTA
dot-bracket secondary structure
.........((((((((((((((((((((((((((((((((((.((((((((((....)))))))))).)))))))))))))))))))))))))))))))
)))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCCATTGTTAGGTACTTCCTCCGTTCCTAAATACTTGTCGCTATTTTAGTGCAAACTTGTACTAAAACAGCGACAAGTATTTAGGAACGGAGGGAGTAT
TTACTTATCTA
dot-bracket secondary structure
.........((((((((((((((((((((((((((((((((((.((((((((((....)))))))))).)))))))))))))))))))))))))))))))
)))........
SIMILARITIES| miRBase bdi-MIR5175a: 4e-16 PMRD tae-miR1136: 0.00008 microPC miR1132: 0.00000002 | UniProt no hits RFAM MIR1122: 5e-31 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
