ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATGGGACGGAGGGAGTAATA miRNA* ATACTTCCTCCGTCCCATATT mismatches: 3 bulges: 0 |
pre-miRNA
AATCACAAAAGAAATACTTCCTCCGTCCCATATTAAGTGACTCAAATTTGTCCAAATATGGATGCATCTATACCCCAAAAGTGTATAGATGCATGTAATA
TTTCGTCACTTAATATGGGACGGAGGGAGTAATAACTACTCCCT
dot-bracket secondary structure
..((......))..(((((((((((((((((((((((((((..((((.(.((((....))))(((((((((((.........))))))))))).)....)
))).))))))))))))))))))))))))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATCACAAAAGAAATACTTCCTCCGTCCCATATTAAGTGACTCAAATTTGTCCAAATATGGATGCATCTATACCCCAAAAGTGTATAGATGCATGTAATA
TTTCGTCACTTAATATGGGACGGAGGGAGTAATAACTACTCCCT
dot-bracket secondary structure
..((......))..(((((((((((((((((((((((((((..((((.(.((((....))))(((((((((((.........))))))))))).)....)
))).))))))))))))))))))))))))))).............
SIMILARITIES| miRBase bdi-MIR5171: 0.0000000000005 PMRD bdi-miR1135: 0.000007 microPC miR1439: 0.0004 | UniProt no hits RFAM MIR1122: 4e-29 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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