ABOUT THIS RECORDspecies: Citrus clementina
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Citrus clementina Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCACCCCT miRNA* GAGTGATCCTGAGAACAGAGG mismatches: 2 bulges: 1 |
pre-miRNA
GCAACAGATGTGAAACCCCAGAGGAGTGATCCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTA
AATCAAAAAGATTGTATGTGGCCAACGCACCTTGTGTTCTCAGGTCACCCCTTTGGGAATTCAATTGTCAAT
dot-bracket secondary structure
...((((...((((..((((((((.((((.((((((((((.((((((.(((((((((((((...))))).((.((.((.....))....)).))((((..
((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..)))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCAACAGATGTGAAACCCCAGAGGAGTGATCCTGAGAACAGAGGGTGGCGTTGGCTTAAATTTGATTTGCATTGCTGCTGCCTGCTCCTGCCATACATTA
AATCAAAAAGATTGTATGTGGCCAACGCACCTTGTGTTCTCAGGTCACCCCTTTGGGAATTCAATTGTCAAT
dot-bracket secondary structure
...((((...((((..((((((((.((((.((((((((((.((((((.(((((((((((((...))))).((.((.((.....))....)).))((((..
((((.....))))..)))))))))))))))))).)))))))))))))).))))))))..)))).))))....
SIMILARITIES| miRBase csi-MIR398: 4e-94 PMRD vvi-miR398a: 0.0000001 microPC miR398: 2e-71 | UniProt no hits RFAM MIR398: 0.00000001 | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST046491) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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