ABOUT THIS RECORDspecies: Helianthus annuus
miRNA family: miR160a
source: miRNEST
Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCGTATGAGGAGCCAAGCATA miRNA* TGCCTGGCTCCCTGTATGCCA mismatches: 2 bulges: 0 |
pre-miRNA
GAGTATAAGTATATGCCTGGCTCCCTGTATGCCATTTCCAGAGCCCACCAGTATCACCGGTGACCTCCGTGAATGGCGTATGAGGAGCCAAGCATATTCC
CCATCT
dot-bracket secondary structure
((........((((((.(((((((.((((((((((((...(((..((((.((...)).))))..)))...)))))))))))).))))))).))))))...
...)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGTATAAGTATATGCCTGGCTCCCTGTATGCCATTTCCAGAGCCCACCAGTATCACCGGTGACCTCCGTGAATGGCGTATGAGGAGCCAAGCATATTCC
CCATCT
dot-bracket secondary structure
((........((((((.(((((((.((((((((((((...(((..((((.((...)).))))..)))...)))))))))))).))))))).))))))...
...)).
SIMILARITIES| miRBase vvi-MIR160e: 2e-21 PMRD vvi-miR160f: 2e-21 microPC miR160: 4e-19 | UniProt no hits RFAM mir-160: 1e-16 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
