ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf1261
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACCATCAATTCATCGTGGCCG miRNA* GCCATGATAAGCTTTGTGGATGT mismatches: 2 bulges: 2 |
pre-miRNA
TTTTCCATAGCACCATCAATTCATCGTGGCCGATGTGCTTAGGACGGCCATGATAAGCTTTGTGGATGTAGTAC
dot-bracket secondary structure
.........(((((((.((((.((((((((((............)))))))))).)).)).)))).))).....
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
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TTTTCCATAGCACCATCAATTCATCGTGGCCGATGTGCTTAGGACGGCCATGATAAGCTTTGTGGATGTAGTAC
dot-bracket secondary structure
.........(((((((.((((.((((((((((............)))))))))).)).)).)))).))).....
SIMILARITIES| miRBase ath-MIR835: 0.0002 PMRD ath-miRf10707-akr: 0.0002 microPC no hits | UniProt sp|Q9C9Z5|NDUA1_ARATH: 0.00004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
degradome data
download this record
