ABOUT THIS RECORDspecies: Zea mays
miRNA family: miR166d
source: miRNEST
Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAATGTTGTCTGGTTCAAGG miRNA* TCGGACCAGGTTTCTTCCCC mismatches: 5 bulges: 1 |
pre-miRNA
TGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTTTGCTTTGTGATCCATCTGTGTAGAGCTTCTTAGTATCCTTGGATCTGCAGATCTCGGACCAGG
TTTCTTCCCCTCCAAAAT
dot-bracket secondary structure
.......(((.((((.....((((((((.(((((...(((.....((((((.......(((...))).........)))))).)))))))).))))))))
....)))).)))......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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TGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTTTTGCTTTGTGATCCATCTGTGTAGAGCTTCTTAGTATCCTTGGATCTGCAGATCTCGGACCAGG
TTTCTTCCCCTCCAAAAT
dot-bracket secondary structure
.......(((.((((.....((((((((.(((((...(((.....((((((.......(((...))).........)))))).)))))))).))))))))
....)))).)))......
SIMILARITIES| miRBase zma-MIR166d: 8e-36 PMRD zma-miR166d: 8e-36 microPC miR166: 0.0000004 | UniProt no hits RFAM mir-166: 4e-38 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
