ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1431
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGCGAGTTGGCCCGCTTGC miRNA* AAGCGGGTCAACCCGTGAACC mismatches: 1 bulges: 0 |
pre-miRNA
GAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCAC
TTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGCATC
CCTAGATGCCGTCTTA
dot-bracket secondary structure
.......(((((((((((.(((((((((((((((.((((((((.(((((((...(((((.(((.((((((((((........(((..(((.(((((((((
(((......)))))).))....)))).))).)))..........))))))))))))).)))))...))))))).)))))))).))))))))))))))).)
))))).....))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
GAAAGGAAAGACTTAGGGTTGCAAGCGGGTCAACCCGTGAACCCGCTTATAGGCAAAATTAGTAGGTAACCCGTATAAATGAGTTTATGGATCGACCCAC
TTGCATCTCTAAGTGCGGCAAATCGGACCACGACGTGAAAACACACGGGTTATCACTTATTTTACATATAAGTAGGTTTGCGAGTTGGCCCGCTTGCATC
CCTAGATGCCGTCTTA
dot-bracket secondary structure
.......(((((((((((.(((((((((((((((.((((((((.(((((((...(((((.(((.((((((((((........(((..(((.(((((((((
(((......)))))).))....)))).))).)))..........))))))))))))).)))))...))))))).)))))))).))))))))))))))).)
))))).....))))).
SIMILARITIES| miRBase osa-MIR1431: 7e-121 PMRD osa-miR1431: 7e-121 microPC miR1431: 1e-97 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1431 from microPC (MNEST045558) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
