miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST003791
species: Oryza sativa
miRNA family: MIR1438
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGGGTAATTTTACCATTTTTA

miRNA*
AGAATTATAAAATTCCTCTA

mismatches: 3
bulges: 1

View larger
pre-miRNA
GTCTCTTTCATACATATGCTCCATATATAAAAGGGTAATTTTACCATTTTTATAAAGTATCTAGAGGTAATATATTTTCTAGTGTAAAAATTTGGTGTAC
CATAAATTTTACACTAAAATTTAGATGTCTCAAAATACTTTCTTAAGAATTATAAAATTCCTCTATATAAAATCATGTATATATATCTGCGAA


dot-bracket secondary structure
.........(((.((((((....((((((...(((.(((((((..(((((((.(((((((...((((..((.((..((.((((((((((.(((((....)
)).)).)))))))))).))..)).)).))))...)))))))..)))))))..)))))))))).)))))).......)))))).))).......



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record





Liczniki na strone;