ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1432
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACCGTGCCATTGATGCCGGT miRNA* CGGCCTCCGACAGCACGGTTAA mismatches: 5 bulges: 1 |
pre-miRNA
CGCCGCCCACGCCGGCCTCCGACAGCACGGTTAAGTCTGGAGCTGTGCACTCCAGTCCGGCAATGGAGGACAGTAAGCTGGTGGGTGCCCGGTGTTCTTG
TTTGTCCTTGCTGTATTTGGACCGTGCCATTGATGCCGGTAGGGCAGAT
dot-bracket secondary structure
....((((..((((((.((.....((((((((.(((..(((((((.((((((....(((((..((.....))....))))).)))))).)))).......
....)))..))).......))))))))....)).)))))).))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
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CGCCGCCCACGCCGGCCTCCGACAGCACGGTTAAGTCTGGAGCTGTGCACTCCAGTCCGGCAATGGAGGACAGTAAGCTGGTGGGTGCCCGGTGTTCTTG
TTTGTCCTTGCTGTATTTGGACCGTGCCATTGATGCCGGTAGGGCAGAT
dot-bracket secondary structure
....((((..((((((.((.....((((((((.(((..(((((((.((((((....(((((..((.....))....))))).)))))).)))).......
....)))..))).......))))))))....)).)))))).))))....
SIMILARITIES| miRBase no hits PMRD osa-miRf10242-akr: 1e-66 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
Source sequences
download this record
