ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf1407
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTCTTGCCCAAGTCGCTGCCG miRNA* GCGGCGGACGGCGGCAAGGCGC mismatches: 4 bulges: 1 |
pre-miRNA
AGGCAGAATCCGGAGGTGAGCGTCTTGCCCAAGTCGCTGCCGCCGGCGAAGAAGTAGGCGGCGGCGGACGGCGGCAAGGCGCCGGCCAAGGTGACACAGA
dot-bracket secondary structure
.((......))...(((..((((((((((....(((((((((((.((......)).))))))))))).....))))))))))..))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGCAGAATCCGGAGGTGAGCGTCTTGCCCAAGTCGCTGCCGCCGGCGAAGAAGTAGGCGGCGGCGGACGGCGGCAAGGCGCCGGCCAAGGTGACACAGA
dot-bracket secondary structure
.((......))...(((..((((((((((....(((((((((((.((......)).))))))))))).....))))))))))..))).............
SIMILARITIES| miRBase no hits PMRD osa-miRf10995-akr: 9e-17 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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